PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_D4386368B.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 903aa    MW: 101705 Da    PI: 8.5689
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_D4386368B.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.37.8e-21190273190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            k+Y +YA +vGFsvrk    k+ ++g   +r +vCs+eg+r+++  k     r+ +etrtgC a++ + ++ +gk++vt+++++HnH+
  Traes_2BL_D4386368B.2 190 KYYVSYAGNVGFSVRKGLWDKTAKSG-SRSRFYVCSREGFRAKNLPK-----RPCPETRTGCPARFSIMLTPSGKYRVTEFVQDHNHQ 271
                            69********************8888.8999***********98877.....9*********************************** PP

                   FAR1  89 la 90 
                            la
  Traes_2BL_D4386368B.2 272 LA 273
                            96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-18190273IPR004330FAR1 DNA binding domain
PfamPF105512.5E-28370463IPR018289MULE transposase domain
PROSITE profilePS5096610.014637684IPR007527Zinc finger, SWIM-type
PfamPF044345.3E-4657682IPR007527Zinc finger, SWIM-type
SMARTSM005756.8E-4659686IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MATTSGGGAA GDPAASSPAP SQPQHPTPRI SHIVRTYLDL SSNSKKRRAA RKNQLKPGGV  60
ETSAAGENKG CGPSGAASLE HSRLLRELGI RVSRYTNEER RDIITRYMQK RSGRQGVNRA  120
AAKVPSRQAL AERRRRSAGG QFLGKEDLQT ADKPEEKAEE EPELPPEVVA NAGGVPIIGM  180
VFESEEKACK YYVSYAGNVG FSVRKGLWDK TAKSGSRSRF YVCSREGFRA KNLPKRPCPE  240
TRTGCPARFS IMLTPSGKYR VTEFVQDHNH QLAGPIDIGM LKSQRLLSKV QSGNGNAISI  300
PSRYKNYLRT KSTKDMNAGD FGALTDYFRS MKSDNPSFYY AIQVDENDKA ANVFWADARS  360
IFDYHYFSDV ICFDMTYKLN DYSRPLAFIL GMNHHRQMVI FGAAFLYDET AESFKWLLET  420
FKSAMCGKQP KTILTDRSAA LKEALDLAWP GTVHRYCLWQ IYQDAAKSLA HVFCISEEFT  480
HDFSHCVFDV EDGQEFVETW NVIMEKYNLK ENKLLNELYE GRENWALPYG RQIFSGDIKS  540
MVRAETLGIR MKEYLGCEKE LSPFLKFFES SVEKRRQEEI QADYQASQRE PRTPLPLLWQ  600
AANLYTPINF ELFRKEYEEC MDCMVYGCGE FGSLSEYMIT VKNRTKEQLV RFDSSDGTVA  660
CTCKKFETAG ILCCHILKVY ELKNVKEIPP QYLLKRWSKD AKLGTVHEID GFSFDSHIGS  720
CVPERYAALC RLFYKIASKA AANVETFSMV ASQSDQLNEG IERTLQSTLA AKSSVVHSIK  780
DQLTRMAQND YPLGNSSEAQ KSTGKKMSEV THRGNCQETN KRQKQRRGHS GEAAAGPRER  840
EVNVTDQFLP DQLMQGHYVL GHNFGISTSQ NIRDDLNQFG QASAVPILQQ QPFPGNGPLT  900
ETQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485280.0AK248528.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf51g04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240422.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLW5BFQ70.0W5BFQ7_WHEAT; Uncharacterized protein
STRINGMLOC_74600.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]